Let's take a
closer look at a few specific types of cell structures, and examine
how Foxy may have been involved with them.
Mitochondria
Much of the basic metabolism of life takes
place in the mitochondria, a Eukaryotic organelle that contains its
own DNA.
There is strong evidence that mitochondria
were originally rikettsia-like bacteria which were absorbed by early
Eukaryotic cells. The relationship was probably symbiotic at first,
but eventually the mitochondria lost many of its metabolic functions,
which were replaced by genes in the eukaryote itself.
Eukaryote mitochondria contain much more
structure than bacteria, which may be the result of Foxy scripts.
Arranging metabolic enzymes into precise structures could increase
efficiency and create compounds that might not be possible to synthesize
otherwise, so the mitochondria certainly seem like an excellent place
for Foxy scripts to be used.
Mitochondrial DNA is circular like bacterial
DNA, but in most species it contains more introns than the typical
bacterial cell. However many mitochondrial proteins are transcribed
from genes in the nucleus of the parent cell, so any repetitive scripts
could just as easily be located there.
Chloroplasts
Some early Eukaryotes also assimilated another
small organism-- a blue-green algae, which is pretty much just
a bacteria that is capable of photosynthesis.
As with the mitochondria, chloroplasts have
their own DNA, although some of the structure within the chloroplast
is coded in the main cell DNA instead.
Eukaryote chloroplasts have a much more sophisticated
level of organization within the chloroplast, then their blue-green
algae precursors, and it's very likely to be the result of
Foxy scripts.
Endoplasmic Reticulum
We've already talked a little about the rough endoplasmic reticulum,
where the cell's protein synthesis takes place (it's
rough because of all the ribosomes on its surface).
There is also a smooth version of the same
tissue, and it's the location for most chemosynthesis in eukaryotic
cells. Along with the Golgi apparatus, this organelle is basically
a whole scad of membrane surface filled with enzymes.
Advanced chemosynthesis is the perfect place
for Foxy to have a role. By choosing from a 'library' of
possible enzymes and placing them in specific positions, simple script
changes could lead to different synthetic pathways that would produce
entirely different compounds.
That kind of specifying would be particularly
useful in the plant kingdom, where the creation of a new chemical
compound might have a huge effect on survival value, by eliminating
a pest, poisoning a competitor or attracting a pollinator.
All biochemical reactions are based on only
a small number of basic chemical changes: oxidations, reductions,
dehydrations, hydrations and so on. It's quite reasonable to
suppose that a scripted sequence of basic enzymes positioned properly
along a tubule could create an exotic new compound without need for
any new enzymes at all.
Of course, even if new enzymes evolved in
a cell, Foxy positioning would still be useful to position any coenzymes
or assisting enzymes into optimum position near the new enzyme.
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