When looking at the
gradual transformation of Caleb into a self-sufficient Cassius,
so far we have only focused on its self-replication needs. But
in fact, to be a really successful organism, it needed many other
skills, besides the ability to produce its own ingredients. These
additional improvements probably evolved in parallel with the changes
we've already mentioned.
First and foremost was energy management-- the ability to tap
some source of energy, and use it to drive chemical reactions.
ATP
Back in the very early days, Fred and Roscoe
assembled proteins and chains without any energy inputs, using exothermic
or weakly endothermic reactions that did not require a significant
source of outside energy to complete. Because of that, they couldn't
survive in many places. Most likely they were most confined to highly
concentrated pools where the hydrodynamic forces made it easier to
polymerize long chains.
Any Caleb that could generate energy, and
then deliver it to drive reactions more reliably, would have gained
an enormous selective advantage. So it seems likely that energy management
became a part of the repertoire of some Cassius, fairly early in
its existence.
Fortunately, that were plenty of possible
sources for raw energy. Nothing had been 'eating' the
soup, yet, so there was a wealth of possible chemical reactions that
a Caleb or Cassius could use.
Nowadays, plants and cyanobacteria absorb
photons in the visible range, and convert them to usable energy via
complex chemical pathways. Meanwhile, nearly all animals and many
bacteria grab organic compounds from somewhere or another, and oxidize
them with oxygen from the atmosphere to 'burn' themselves
some energy.
These are both highly energetic reactions
that allow for a modern, rapid lifestyle, but neither would have
been very convenient for Caleb. Most likely, free oxygen was not
yet available, and photosynthesis requires far too many clever enzymes
for such a primitive organism.
On the other hand, some modern Archaea and
bacteria rely on a variety of anaerobic reactions as an energy source.
Compounds of iron and sulfur in particular provide smaller, easily
managed amounts of energy, as they shift between valence states.
One of these simpler reactions was probably the first energy source
for a Caleb or Cassius.
Energy Storage
It's not usually convenient to drive a biochemical reaction
directly from a raw energy source, so any Caleb that could store
and deliver manageable amounts of energy would gain a huge selective
advantage.
It doesn't take very much energy to shove two amino acids or
two chain molecules together. Even in a dilute solution, the energy
required to bind peptides and nucleotides is on the order of .2 electron
volts per molecule, which is about 1/10 the energy of a typical light
photon. Since polymerizing was the most important reaction performed
by early versions of Caleb, it seems likely that the best energy
storage unit would be for about that much energy.
When one of the common purines (adenine)
links up with a ribose sugar and a few phosphate groups, it can store
about .3 electron volts of energy-- just about the perfect amount
of energy to assist a Fred or Roscoe.
The reactions of AMP (adenosine monophosphate),
ADP (adenosine diphosphate) and ATP (adenosine triphosphate) are
extremely important to modern life, and it's quite likely that
they appeared in early version of Caleb as well . Conveniently, adenosine
is also one of the components of RNA and DNA, and it's very
likely that it was one of the chain molecules in early forms of Caleb.
The adenosine phosphates are so vital to
life that the probably deserve an 'Evolution of' book
of their very own, but we'll try to confine ourselves to DNA
in this one, and skip over the details of ATP's appearance.
Ribophosphates
When we talked about genetic chains in the
early days of Fred and Sofia, we were deliberately vague about their
composition. The first chains really could have been almost anything.
In fact, since the ribophosphate 'backbone' of RNA is
rather hard to assemble under soup conditions, it seems likely that
the early chains were not true RNA, but rather simpler polymers of
purines and/or pyrimidines, or possibly some entirely different chain-forming
molecules.
As ATP-based energy management appeared,
Calebs would have gradually become more proficient at managing all
types of chemical reactions that used phosphate bonds to store a
bit of energy.
The phosphate content of RNA gives it an
important advantage, since it carries a small jolt of energy that
helps speed up replication and other reactions. That means that the
first Caleb that stumbled upon chain molecules linked by ribophosphates
would have gained a significant advantage over its less energetic
cousins.
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